Intergrative Mycology Lab​​


Publications

2017

23.  The Aspergillus flavus Homeobox Gene, hbx1, is Required for Development and Aflatoxin Production.
Cary JW, Harris-Coward P, Scharfenstein L, Mack BM, Chang PK, Wei Q, Lebar M, Carter-Wientjes C, Majumdar R, Mitra C, Banerjee S, Chanda A. Toxins. 2017; 9(10). PubMed [journal] PMID: 29023405 PMCID: PMC5666362​​​​ ​

22.  The Fungal bZIP Transcription Factor AtfB Controls Virulence-Associated Processes in Aspergillus parasiticus.
Wee J, Hong SY, Roze LV, Day DM, Chanda A, Linz JE. Toxins. 2017; 9(9). PubMed [journal] PMID: 28926946 PMCID: PMC5618220

21.  Complete Genome Sequence of Vibrio gazogenes ATCC 43942.
Gummadidala PM, Holder ME, O'Brien JL, Ajami NJ, Petrosino JF, Mitra C, Chen YP, Decho AW, Chanda A.
Genome announcements. 2017; 5(30). PubMed [journal] PMID: 28751405 PMCID: PMC5532843

20.  Citrate-Coated Silver Nanoparticles Growth-Independently Inhibit Aflatoxin Synthesis in Aspergillus parasiticus.
Mitra C, Gummadidala PM, Afshinnia K, Merrifield RC, Baalousha M, Lead JR, Chanda A. Environmental science & technology. 2017; 51(14):8085-8093. PubMed [journal] PMID: 28618218

19.  TGF-β triggers rapid fibrillogenesis via a novel TβRII-dependent fibronectin-trafficking mechanism.
Varadaraj A, Jenkins LM, Singh P, Chanda A, Snider J, Lee NY, Amsalem-Zafran AR, Ehrlich M, Henis YI, Mythreye K.
Molecular biology of the cell. 2017; 28(9):1195-1207. PubMed [journal] PMID: 28298487 PMCID: PMC5415016

18.  Dietary selenium protects adiponectin knockout mice against chronic inflammation induced colon cancer.
Saxena A, Fayad R, Kaur K, Truman S, Greer J, Carson JA, Chanda A. Cancer biology & therapy. 2017; 18(4):257-267.
PubMed [journal]PMID: 28045589 PMCID: PMC5450735
17.  Bayesian model selection framework for identifying growth patterns in filamentous fungi.
Lin X, Terejanu G, Shrestha S, Banerjee S, Chanda A. Journal of theoretical biology. 2016; 398:85-95. PubMed [journal] PMID: 2700077

16.  Fluoroquinolone-related neuropsychiatric and mitochondrial toxicity: a collaborative investigation by scientists and members of a social network.
Kaur K, Fayad R, Saxena A, Frizzell N, Chanda A, Das S, Chatterjee S, Hegde S, Baliga MS, Ponemone V, Rorro M, Greene J, Elraheb Y, Redd AJ, Bian J, Restaino J, Norris LB, Qureshi ZP, Love BL, Brookstaver B, Georgantopoulos P, Sartor O, Raisch DW, Rao G, Lu K, Ray P, Hrusheshky W, Schulz R, Ablin R, Noxon V, Bennett CL. The Journal of community and supportive oncology. 2016; 14(2):54-65. PubMed [journal] PMID: 26955658

Gummadidala PM, Chen YP, Beauchesne KR, Miller KP, Mitra C, Banaszek N, Velez-Martinez M, Moeller PD, Ferry JL, Decho AW, Chanda A. Frontiers in microbiology. 2016; 7:814. PubMed [journal] PMID: 27375561 PMCID: PMC4891353
14.  Mycoremediation with mycotoxin producers: a critical perspective.
Chanda A, Gummadidala PM, Gomaa OM. Applied microbiology and biotechnology. 2016; 100(1):17-29. PubMed [journal] PMID: 2647664
13.  Subsurface pressure profiling: a novel mathematical paradigm for computing colony pressures on substrate during fungal infections.
Patra S, Banerjee S, Terejanu G, Chanda A. Scientific reports. 2015; 5:12928. PubMed [journal] PMID: 26262897 PMCID:  PMC4531784

Kaur K, Saxena A, Larsen B, Truman S, Biyani N, Fletcher E, Baliga MS, Ponemone V, Hegde S, Chanda A, Fayad R.
Journal of inflammation (London, England). 2015; 12:35. PubMed [journal] PMID: 25949213 PMCID: PMC442260 
11.  Quantitative acoustic contrast tomography reveals unique multiscale physical fluctuations during aflatoxin synthesis in Aspergillus parasiticus.
Banerjee S, Gummadidala PM, Rima RA, Ahmed RU, Kenne GJ, Mitra C, Gomaa OM, Hill J, McFadden S, Banaszek N, Fayad R, Terejanu G, Chanda A. Fungal genetics and biology : FG & B. 2014; 73:61-8. PubMed [journal] PMID: 25312859
10.  CYP2E1-dependent and leptin-mediated hepatic CD57 expression on CD8+ T cells aid progression of environment-linked nonalcoholic steatohepatitis.
Seth RK, Das S, Kumar A, Chanda A, Kadiiska MB, Michelotti G, Manautou J, Diehl AM, Chatterjee S.
Toxicology and applied pharmacology. 2014; 274(1):42-54. NIHMSID: NIHMS538769
PubMed [journal] PMID: 24211274 PMCID: PMC3874401

9.  Proteomic and biochemical evidence support a role for transport vesicles and endosomes in stress response and secondary metabolism in Aspergillus parasiticus.
Linz JE, Chanda A, Hong SY, Whitten DA, Wilkerson C, Roze LV. Journal of proteome research. 2012; 11(2):767-75. NIHMSID: NIHMS342498 PubMed [journal] PMID: 22103394 PMCID: PMC3272149
8.  Purification of a vesicle-vacuole (V) fraction from Aspergillus.
Chanda A, Roze LV, Linz JE. Methods in molecular biology (Clifton, N.J.). 2012; 944:259-66. PubMed [journal]
PMID: 23065623

7.  Stress-related transcription factor AtfB integrates secondary metabolism with oxidative stress response in aspergilli.
Roze LV, Chanda A, Wee J, Awad D, Linz JE. The Journal of biological chemistry. 2011; 286(40):35137-48. PubMed [journal] PMID: 21808056 PMCID: PMC3186425
6.  Compartmentalization and molecular traffic in secondary metabolism: a new understanding of established cellular processes.  Roze LV, Chanda A, Linz JE. Fungal genetics and biology : FG & B. 2011; 48(1):35-48. NIHMSID: NIHMS212489 PubMed [journal] PMID: 20519149 PMCID: PMC2949687
5.  A possible role for exocytosis in aflatoxin export in Aspergillus parasiticus.
Chanda A, Roze LV, Linz JE. Eukaryotic cell. 2010; 9(11):1724-7. PubMed [journal] PMID: 20870882 PMCID: PMC2976301
4.  Volatile profiling reveals intracellular metabolic changes in Aspergillus parasiticus: veA regulates branched chain amino acid and ethanol metabolism.
Roze LV, Chanda A, Laivenieks M, Beaudry RM, Artymovich KA, Koptina AV, Awad DW, Valeeva D, Jones AD, Linz JE. BMC biochemistry. 2010; 11:33. PubMed [journal] PMID: 20735852 PMCID: PMC2939540
3.  A key role for vesicles in fungal secondary metabolism.
Chanda A, Roze LV, Kang S, Artymovich KA, Hicks GR, Raikhel NV, Calvo AM, Linz JE. Proceedings of the National Academy of Sciences of the United States of America. 2009; 106(46):19533-8. PubMed [journal] PMID: 19889978 PMCID: PMC2773199
2.  Purification of a vesicle-vacuole fraction functionally linked to aflatoxin synthesis in Aspergillus parasiticus.
Chanda A, Roze LV, Pastor A, Frame MK, Linz JE. Journal of microbiological methods. 2009; 78(1):28-33. NIHMSID: NIHMS128657 PubMed [journal] PMID: 1935886
1.  The initiation and pattern of spread of histone H4 acetylation parallel the order of transcriptional activation of genes in the aflatoxin cluster.
Roze LV, Arthur AE, Hong SY, Chanda A, Linz JE. Molecular microbiology. 2007; 66(3):713-26. PubMed [journal] PMID: 17919289







































2016

2015

2014

2012

2011

2010

2009

2007